Ytdyklly

How do I get the script run with the sbatch command to run with the 23 individual run_prep_chem_$dd.sh (i.e. run_prep_chem_08.sh...run_prep_chem_30.sh)? I am thinking since its in this for loop that it would run properly. The code above the sbatch loops through 23 times but not the at sbatch script line

#!/bin/bash



RP_INPUT='$RP_INPUT'

END='$END'



for dd in {08..30}; do



set dd=$dd



printf  "%-3s %02dn" "$dd" "$((10#$dd + 1))"



cat > /data/users/jwsmith/PREP-CHEM-SRC-1.4/bin/PREP_FILES/prep_chem_sources_$dd.inp << __EOF

$RP_INPUT



!---------------- grid_type of the grid output

   grid_type= 'mercator',

                        !'rams' = rams grid

                        ! 'polar'  = polar sterog. grid output

                        ! 'gg'  = gaussian grid output

                        ! 'll'  = lat/lon grid output

                        ! 'lambert'  = lambert grid output

                        ! 'mercator' = mercator grid output



!---------------- if the output data is for use in CATT-BRAMS model, provide at least one analysis file



$END



__EOF



cp /data/users/jwsmith/PREP-CHEM-SRC-1.4/bin/PREP_FILES/prep_chem_sources_$dd.inp /data/users/jwsmith/PREP-CHEM-SRC-1.4/bin/prep_chem_sources.inp



cat > /data/users/jwsmith/PREP-CHEM-SRC-1.4/bin/PREP_FILES/run_prep_chem_$dd.sh << BEOF

#!/bin/bash -x

#SBATCH --ntasks=1

#SBATCH --mem-per-cpu=100000

#SBATCH --cpus-per-task=1

#SBATCH --time=00:30:00

export I_MPI_JOB_STARTUP_TIMEOUT=10000



source /etc/bashrc



module load hdf5/1.8.12



srun --distribution=block:block /data/users/jwsmith/PREP-CHEM-SRC-1.4/bin/prep_chem_sources_RADM_WRF_FIM.exe



BEOF



chmod 757 /data/users/jwsmith/PREP-CHEM-SRC-1.4/bin/PREP_FILES/run_prep_chem_$dd.sh



mv /data/users/jwsmith/PREP-CHEM-SRC-1.4/bin/PREP_FILES/run_prep_chem_$dd.sh  /data/users/jwsmith/PREP-CHEM-SRC-1.4/bin/run_prep_chem_$dd.sh



sbatch --dependency=afterok:$SLURM_JOB_ID /data/users/jwsmith/PREP-CHEM-SRC-1.4/bin/run_prep_chem_$dd.sh



cp /data/users/jwsmith/PREP-CHEM-SRC-1.4/bin/AEROSE_APRIL_CTL-T-2010-04-$dd-000000-g1-ab.bin /data/users/jwsmith/WRFV3/run/AEROSE_APRIL_CTL-T-2010-04-$dd-000000-g1-ab.bin



done